The Bethesdan Hotel

CFDE 2024 Fall Meeting

October 22-23, 2024

The Bethesdan Hotel – Bethesda, MD

Common Fund Data Ecosystem (CFDE) will host a two-day, in-person program meeting in Bethesda, MD on October 22nd and 23rd. This will be an opportunity for DCC PIs, Program Managers, and Technical leads to come together to share updates and accomplishments as well as discuss strategic issues for the coming year. Through the leadership of the ICC and in collaboration with the Program Committee, attendees will hear progress and future plans from both current and new CFDE partnerships. There will also be breakout sessions for the Working Groups, as well as discussions around Upcoming Data and Sustainability. Make sure to register and browse below to learn more about the Program Committee as well as view the latest agenda.

Program Committee and Leadership

Phil Blood, PhD

Phil Blood, PhD

Carnegie Mellon University, University of Pittsburgh

Scientific Director, Pittsburgh Supercomputing Center

Jyl Boline, PhD

Jyl Boline, PhD

Founder, Informed Minds

Jake Chen, PhD

Jake Chen, PhD

University of Alabama at Birmingham

Professor, Dept. of Biomedical Informatics
& Data Science

Director, Systems AI Pharmacology Center (SPARC)

Christy Kano, PhD

Christy Kano, PhD

National Institutes of Health (NIH)

CFDE Coordinator and Project Manager
Office of Strategic CoordinationDivision of Program Coordination, Planning, and Strategic Initiatives

Office of the Director

Chris Kinsinger, PhD

Chris Kinsinger, PhD

National Institutes of Health (NIH)

Assistant Director for Catalytic Data Resources
Office of Strategic Coordination
Division of Program Coordination, Planning, and Strategic Initiatives
Office of the Director

Sahana Kukke, PhD

Sahana Kukke, PhD

National Institutes of Health (NIH)

CFDE Program Officer
Program Leader
Office of Strategic Coordination
Division of Program Coordination, Planning, and Strategic Initiatives
Office of the Director

Avi Ma’ayan, PhD

Avi Ma’ayan, PhD

Icahn School of Medicine at Mount Sinai

Mount Sinai Endowed Professor in Bioinformatics
Professor, Department of Pharmacological Sciences
Director, Mount Sinai Center for Bioinformatics

Mano Maurya, PhD

Mano Maurya, PhD

University of California San Diego

Senior Scientist

Department of Bioengineering

Rahi Navelkar

Rahi Navelkar

Harvard Medical School

Bioinformatics Associate and Data Wrangler

George Papanicolaou, PhD

George Papanicolaou, PhD

National Institutes of Health (NIH)

CFDE Program Officer
Program Manager
Office of Strategic Coordination
Division of Program Coordination, Planning, and Strategic Initiatives
Office of the Director

Peipei Ping, PhD

Peipei Ping, PhD

University of California, Los Angeles

Professor, Dept. of Professor of Physiology, Medicine/Cardiology, and Biomedical Informatics

Matthew Roth, Phd

Matthew Roth, PhD

Baylor College of Medicine

Associate Professor, Molecular & Human Genetics

Jonathan Silverstein, PhD

Jonathan Silverstein, PhD

University of Pittsburgh

Chief Research Informatics Officer, Health Sciences and Institute for Precision Medicine (IPM)

Professor, Department of Biomedical Informatics (DBMI), School of Medicine

Shankar Subramanium, PhD

Shankar Subramanium, PhD

University of California San Diego

Distinguished Professor of Bioengineering, Bioinformatics and Systems Biology, Computer Science & Engineering, Cellular & Molecular Medicine and Nano Engineering

Swathi Thaker, PhD

Swathi Thaker, PhD

University of Alabama at Birmingham

Program Operations Manager
Systems AI Pharmacology Center (SPARC)

Matthew Wheeler, MD, PhD

Matthew Wheeler, MD, PhD

Stanford University

Director, Center for Undiagnosed Diseases at Stanford

Adult Medical Director, Center for Undiagnosed Diseases at Stanfordg

Local Dining Options

If you are looking for some dinner/social options in the Bethesda area, check out these fantastic suggestions from George!

Bethesda Circulator provides free loops (red) around Bethesda

FAQ

Who can attend?

This meeting is intended for DCC leadership. Typically this includes PIs, Program Managers, and/or Technical Leads. This is a smaller meeting for key/lead members of CFDE.

Who can I contact if I have questions?

If you have any questions or concerns please contact Swathi Thaker at snthaker@uab.edu

How do I register?

You may register here.

Are there other hotels nearby?

We encourage all attendees to stay at The Bethesdan through the Block rate. However, if you prefer, there are a couple of other options nearby. The Hyatt Regency Bethesda and the Marriott Bethesda Downtown may also be suitable options.

Will meals be provided?

Both Breakfast and Lunch will be provided on October 22nd and 23rd at The Bethesdan Hotel.

Will there be a virtual option?

This meeting is designed to be an in-person event and we highly encourage everyone to attend on site. However, a virtual option will be provided for those interested.

Join Zoom Meeting

https://uab.zoom.us/j/85969611085?pwd=Rdx1SGq9jgUznQ43rfYT2WNuYHQsnT.1

Meeting ID: 859 6961 1085

Passcode: 428813

Where are the sessions located?

Please refer to the below floorplan for room locations.

Bethesdan Floor Plan
Agenda
Tuesday, October 22nd
Time (EST)Session Title and PresenterLocation
7:30 – 8:30BreakfastWisconsin
8:30 – 8:40Welcome and Logistics

Presenter: Integration and Coordination Center
Ballroom C+D
8:40 – 9:00NIH Opening Remarks

Presenter: Carolyn Hutter
Ballroom C+D
9:00 – 9:30New Center Introductions

Moderator: Sahana Kukke

Training Center: Jennifer Burnette, Oak Ridge Associated Universities (ORAU)

Cloud Workspace Implementation Center: John Fonner, Texas Advanced Computing Center
Ballroom C+D
9:30 – 9:45BreakWisconsin
9:45 – 11:15Update on FY23-24 CFDE Partnerships

Moderator: George Papanicolaou

Biomarkers: Daniall Masood
COMPA:
Data Distillery: Deanne Taylor
Workflow Playbook Builder: Daniel Clarke
Transcriptome: Matthew Wheeler
FAIR Variant: Keyang Yu
Cloud Workspace Pilot: Adam Resnick
Ballroom C+D
11:15 – 11:30BreakWisconsin
11:30 – 12:30New FY24-25 CFDE Partnerships

Moderator: Chris Kinsinger

Community Visualization Hub: Nils Gehlenborg
UniProt-CFDE Partnership: Cathy Wu
Metabotyping Humans: Shankar Subramaniam
Biomarker KB: Raja Mazumder
Genetic basis of birth defects and childhood cancer U24: Deanne Taylor
Ballroom C+D
12:30 – 1:30LunchWisconsin
1:30 – 3:00Center Updates: DRC, KC, ICC

Moderator: Christy Kano

DRC: Avi Ma’ayan and Shankar Subramaniam
KC: Noel Burtt and Jason Flannick
ICC: Jake Chen, Sean Davis, Peipei Ping, Wei Wang
Ballroom C+D
3:00 – 3:30BreakWisconsin
Working Group Special Topics
(rotation X2, 40 min each)
3:30 – 5:00Ontology WG: Mano Maurya and Srini RamachandranWisconsin
3:30 – 5:00Knowledge Graph WG: Deanna Taylor and Jonathan SilversteinCordell
3:30 – 5:00Outreach and Communications: Noel BurttRosedale
END OF DAY 1
Wednesday, October 23rd
Time (EST)Session Title and PresenterLocation
7:30 – 8:30BreakfastWisconsin
8:30 – 10:30Upcoming CFDE Data

1. SenNet/HuBMAP (30 min + 5 min Q&A), Jonathan Silverstein/Phil Blood

2. Bridge2AI (30 min + 5 min Q&A), Alex Bui

3. MoTrPAC (20 min + 5 min Q&A), Matthew Wheeler 

4. ComPASS (20 min + 5 min Q&A), Jan Eberth

Moderator: Phil Blood and Peipei Ping
Ballroom C+D
10:30 – 10:45BreakWisconsin
10:45 – 12:00Knowledge Graphs and LLMs: CFDE Products and Opportunities

1. Knowledge Graphs and LLMs (20 min + 5 min Q & A), Carl Yang

2. Perspectives from Data Distillery (10 min), Deanne Taylor (w/Jonathan Silverstein)

3. Perspectives from the DRC (10 min), Avi Ma’ayan

4. Perspectives from the KC (5 min) Jason Flannick

5. Q & A for Panel

Moderator: George Papanicolaou
Ballroom C+D
12:00 – 1:00LunchWisconsin
1:00 – 2:00Special Topics: Harmonizing CFDE Data to Answer Integrative Questions

1. GetSetCart (10 min), Giacomo Marino (DRC)

Moderator: Shankar Subramaniam and Avi Ma’ayan
Ballroom C+D
2:00 – 3:00Special Topics: Building Methods for Sustainability

Moderator: Wei Wang and Jyl Boline
Ballroom C+D
3:00 – 3:15Wrap-Up and Next Steps

Presenter: George Papanicolaou
Ballroom C+D
END OF CONFERENCE
Floorplan
Floorplan

Tuesday, Oct. 22nd

7:30 – 8:30 (Wisconsin)

Breakfast
8:30 – 8:40 (Ballroom C+D)

Welcome and Logistics
Presenter: Integration and Coordination Center
8:40 – 9:00 (Ballroom C+D)

NIH Opening Remarks
Presenter: Carolyn Hutter
9:00 – 9:30 (Ballroom C+D)

New Center Introductions
Moderator: Sahana Kukke

– Training Center: Jennifer Burnette, Oak Ridge Associated Universities (ORAU)
– Cloud Workspace Implementation Center: John Fonner, Texas Advanced Computing Center
9:30 – 9:45 (BREAK)
9:45 – 11:15 (Ballroom C+D)

Update on FY23-24 CFDE Partnerships
Moderator: George Papanicolaou

– Biomarkers: Daniall Masood
– COMPA: Bernard De Bono
– Data Distillery: Deanne Taylor
– Workflow Playbook Builder: Daniel Clarke
– Transcriptome: Matthew Wheeler
– FAIR Variant: Keyang Yu
– Cloud Workspace Pilot: Adam Resnick
11:15 – 11:30 (BREAK)
11:30 – 12:30 (Ballroom C+D)

New FY24-25 CFDE Partnerships
Moderator: Chris Kinsinger

– Community Visualization Hub: Nils Gehlenborg
– UniProt-CFDE Partnership: Cathy Wu
– Metabotyping Humans: Shankar Subramaniam
– Biomarker KB: Raja Mazumder
– Genetic basis of birth defects and childhood cancer: Deanne Taylor
12:30 – 1:30 (Wisconsin)

Lunch
1:30 – 3:00 (Ballroom C+D)

Center Updates: DRC, KC, ICC
Moderator: Christy Kano

– DRC: Avi Ma’ayan and Shankar Subramaniam
– KC: Noel Burtt and Jason Flannick
– ICC: Jake Chen, Sean Davis, Peipei Ping, Wei Wang
3:00 – 3:30 (BREAK)
3:30 – 5:00 (See Topics)

Special Working Groups

– Ontology WG: Mano Maurya and Srini Ramachandran – (Wisconsin)
– Knowledge Graph WG: Deanna Taylor and Jonathan Silverstein – (Cordell)
– Outreach and Communications: Noel Burtt – (Rosedale)
END OF DAY 1

Wednesday, Oct. 23rd

7:30 – 8:30 (Wisconsin)

Breakfast
8:30 – 10:30 (Ballroom C+D)

Upcoming CFDE Data
Moderator: Phil Blood and Peipei Ping

– SenNet/HuBMAP (30 min + 5 min Q&A), Jonathan Silverstein/Phil Blood
– Bridge2AI (30 min + 5 min Q&A), Alex Bui
– MoTrPAC (20 min + 5 min Q&A), Matthew Wheeler
– ComPASS (20 min + 5 min Q&A), Jan Eberth
10:30 – 10:45 (BREAK)
10:45 – 12:00 (Ballroom C+D)

Knowledge Graphs and LLMs: CFDE Products and Opportunities
Moderator: George Papanicolaou

– Knowledge Graphs and LLMs (20 min + 5 min Q & A), Carl Yang
– Perspectives from Data Distillery (10 min), Deanne Taylor (w/Jonathan Silverstein)
– Perspectives from the DRC (10 min), Avi Ma’ayan
– Perspectives from the KC (5 min) Jason Flannick
– Q & A for Panel
12:00 – 1:00 (Wisconsin)

Lunch
1:00 – 2:00 (Ballroom C+D)

Special Topics: Harmonizing CFDE Data to Answer Integrative Questions
GetSetCart (10 min), Giacomo Marino (DRC)
Moderator: Shankar Subramaniam and Avi Ma’ayan
2:00 – 3:00 (Ballroom C+D)

Special Topics: Building Methods for Sustainability
Moderator: Wei Wang and Jyl Boline
3:00 – 3:15 (Ballroom C+D)

Wrap-Up and Next Steps
Presenter: George Papanicolaou
END OF CONFERENCE

Floor Plan

Floorplan
CFDE Logo